How to represent a protein sequence
September 27, 2023Learning protein representations. Transfer learning, protein language models, contextual embeddings, Transformers, masked language modeling, BERT, ESM, attention analysis.
Written by Liam Bai who lives and works in Boston trying to build useful things. He's on LinkedIn and Twitter.
What we can learn from evolving proteins
September 19, 2023Predicting protein structure and function. Multiple Sequence Alignments (MSAs), the protein folding problem, the Potts model, Direct Coupling Analysis (DCA), EVCouplings.